How to Install SPAdes in UBUNTU/LINUX

How to Install SPAdes in UBUNTU/LINUX

23rdPairLab

11 месяцев назад

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How to Install SPAdes in UBUNTU/LINUX

Required libraries/packages
g++ (version 5.3.1 or higher)
cmake (version 3.5 or higher)
zlib
libbz2
python 3.6 or higher

you can Install them using following commands:
sudo apt-get install gcc make zlib1g-dev libsamtools-dev libhts-dev libboost-dev libhiredis-dev
sudo apt install g++
sudo apt-get install g++=5.3.1
sudo apt-get install cmake=3.5

Commands used in video
apt-cache policy spades
sudo apt-get install spades
(To download binary files)
wget https://github.com/ablab/spades/releases/download/v3.15.5/SPAdes-3.15.5-Linux.tar.gz
(To download source code)
wget https://github.com/ablab/spades/archive/refs/tags/v3.15.5.zip


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